NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0074648_1007330

Scaffold Ga0074648_1007330


Overview

Basic Information
Taxon OID3300005512 Open in IMG/M
Scaffold IDGa0074648_1007330 Open in IMG/M
Source Dataset NameSaline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)7953
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (78.26%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location
Location NameGreece: Etoliko Lagoon
CoordinatesLat. (o)38.4825Long. (o)21.315Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009188Metagenome / Metatranscriptome322Y
F010536Metagenome / Metatranscriptome302N
F026571Metagenome / Metatranscriptome197N
F036728Metagenome / Metatranscriptome169N
F072377Metagenome / Metatranscriptome121N
F087228Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0074648_100733010F026571AGGAMKKYRVNVVGTKYVTTDTEDKAIEHTQEMLDHIHKSLNMQVFSIAEVKETE*
Ga0074648_100733018F010536AGGAMIDVMLSKATEGMLIAELLNRKNEKGMNLFMGRSILLPTGQQQLIAILPNIQLLTNTKQEEE*
Ga0074648_10073302F087228AGGMKRTEYKYYIQYSNRRTEERTIYIDDNNNYVYKYKDRYLEVYDYEYNRVNIPIDKMTRSMLNEYTKSLIKNCKNSWIAQREEQHKVNEYRKFINMFVAKDSLHYLDKLDEKIDEYKVNIELFDDQKLESVG*
Ga0074648_100733023F009188N/ADTGQIYEGRGFGNRSAAQGGNSRQEINYNNKHYVAVCWLGGSEPTHKPSDKAIESVKWLYSQVKGELRPHSSFKQTACPGDAWRQFIIEWDKVDTETLKKSTNITAEDLSNASGPDMIHPQAFQKKLDIIIAKLENIENKLKLGKLIQ*
Ga0074648_10073305F036728N/AMSMVLKQKIELPLDCRYIFVNYNNNLKPFKTTKEVLHFIEGNRLEIVDQQTFNQSYVVVVKKADSFL*
Ga0074648_10073309F072377AGGMSYVNQIDWTCGCMRMTEFDYRSGKERTVGRSYCRKQDCDRKGK*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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