NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0074648_1007518

Scaffold Ga0074648_1007518


Overview

Basic Information
Taxon OID3300005512 Open in IMG/M
Scaffold IDGa0074648_1007518 Open in IMG/M
Source Dataset NameSaline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)7816
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (35.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location
Location NameGreece: Etoliko Lagoon
CoordinatesLat. (o)38.4825Long. (o)21.315Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031652Metagenome182N
F043151Metagenome / Metatranscriptome157N
F046716Metagenome / Metatranscriptome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0074648_100751810F046716GGAGGMLGWIKKLYKRYERFTLEQYDVSPVVYRIGTKKYIKTKKFSKSPVPRTRYQK*
Ga0074648_100751812F031652N/AMAKIRIYAYGTRYFMDTYSHGLSGDCDRLGYDLHMEVVPDAENFSHINHFIHQRMVEVVRDAGADDRILFLDPECRIVRPIPQEWIDDPRPMVCYKIEEDKHDINLYQYGHTLPGAIQMQPIFLTHRDSGWIQWWYDVSMAGSDPDRNVYVPHELFLELSIKYNKVDVHTEHCVYNRDWSHPQRVVKGSYTTQDTIITHPDIHALLDENVKQANESSKTSPFLRKRKLHNHFNDHATVKAIDELMWKEIDDISKWPSDTVLTEGWMCIDNWMFDPKSGRCRHKDYRTIKYHTSVEDKHRRGIHTPAIKRFRADNPTYQISLPQGN*
Ga0074648_100751814F043151AGGAMIPYTAQENEYLSSGSYRRSNTNKHRRVKQEPDLRKHDWAIRTTIEVDGKTYVVPVQV*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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