Scaffold Ga0074648_1007910

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0074648_1007910

Scaffold Ga0074648_1007910

Overview

Basic Information
Taxon OID	3300005512 Open in IMG/M
Scaffold ID	Ga0074648_1007910 Open in IMG/M
Source Dataset Name	Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	7535
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (31.25%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location
Location Name	Greece: Etoliko Lagoon
Coordinates	Lat. (^o)	38.4825	Long. (^o)	21.315	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F031707	Metagenome / Metatranscriptome	182	N
F077253	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074648_100791012	F077253	AGGAG	MSEDKLLREIANDDQTPKAKKLKNTDGLFETTDCSDPDHICTCGNQQFTLIED*
Ga0074648_10079103	F031707	N/A	MEFLNWVEQAKGCKVEDEYGMIYVITGGKLIADSPLWPMIQLVDDLGVLKYVTLDRFSELISIA*

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