NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0074648_1015283

Scaffold Ga0074648_1015283


Overview

Basic Information
Taxon OID3300005512 Open in IMG/M
Scaffold IDGa0074648_1015283 Open in IMG/M
Source Dataset NameSaline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)4656
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (93.75%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location
Location NameGreece: Etoliko Lagoon
CoordinatesLat. (o)38.4825Long. (o)21.315Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006094Metagenome / Metatranscriptome382Y
F007621Metagenome / Metatranscriptome348Y
F012403Metagenome / Metatranscriptome281Y
F017047Metagenome / Metatranscriptome243Y
F017755Metagenome / Metatranscriptome239Y

Sequences

Protein IDFamilyRBSSequence
Ga0074648_101528311F012403AGGAGMRIKPINPVAKAMAQSRRRSQTVPDKTKYNRKKDKDDANKSGKDEVVKD*
Ga0074648_101528313F017047GGAGMNTETDYKIELIQTLWDLFKEVHGVRPHGMGYEKYSVADLEWEVAMLQRQLESDLRWEREQEDRAINACMDCGASDIATAMRWLEDAYEMEWV*
Ga0074648_101528314F017755GGAMARKFITPMGRHKPIRSSWQAMDTQAFSRSYEPETRPEFRVYVTGQADAMMATYRKAKDKADALAILDSLL*
Ga0074648_101528316F007621N/ATPNLYLSSYGFTGYKPLERSERGYIPIKPKDSIKEAKMQNSSTQIVPVVNNTLEAEGFALAKEWKSITKGDKARFTKSTKADGFDTRLGKLMLKLKAEGGDRIASARLKDCGIAGIDKRRRSEAMWFVENEAACRDFIKASKKGFTSLTALQAAMKKADKAATEPKAETPVNSEADDKSNVGLNSEAETAQAKSPSDIALDALVQCEMNGIAIKDFMLALKEQLEMLDETKVAA*
Ga0074648_10152834F006094AGGAGMLLHEFYSDEDCSRGDISYRKSCVFKEPDGSYTIVFIQDGAIVDELNLLGHSQQYAEDTAEDWVMGVRR*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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