NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0074648_1022978

Scaffold Ga0074648_1022978


Overview

Basic Information
Taxon OID3300005512 Open in IMG/M
Scaffold IDGa0074648_1022978 Open in IMG/M
Source Dataset NameSaline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3399
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (100.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location
Location NameGreece: Etoliko Lagoon
CoordinatesLat. (o)38.4825Long. (o)21.315Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010532Metagenome302N
F032867Metagenome / Metatranscriptome179Y
F046985Metagenome150N
F047975Metagenome / Metatranscriptome149Y
F055274Metagenome / Metatranscriptome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0074648_10229781F010532AGGAGMNRTLYKKLEDICAREYILNKLSANKFRTFVDFLYDDIRTWDKPMEVSEVDIIHRIEEHMSYMVSSYLNKPYESTSMNEQALRGA*
Ga0074648_10229782F046985AGGAGGMIVDTKEELNEWWLEEFGIDVDASKYVEIRVPAKTYAMLVQIDIFNIHGKGISDWASKVGVEAINIRTDFSVNMLLRDFQAVKMAVMLREYPFDRGYLQQATKIWRNILQHLRAFNPIYAEELKSKLFKRRVA*
Ga0074648_10229785F055274GAGGMSDLNNDISNALCNAIDIRETINSNGLSNIKRVHSGTDNEDTLKDLIDDVIYFLEQLNNRGK*
Ga0074648_10229786F032867AGGAGGMDELEKMIDDLIDNHYRVQHLIGTEADESEYLADISEVDDE*
Ga0074648_10229787F047975AGGAGGMTKEEWAENTVDDMDWKDLARIAYDVMLDSVKDMSDKEFQEYLIECGYEED*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.