NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0074648_1092618

Scaffold Ga0074648_1092618


Overview

Basic Information
Taxon OID3300005512 Open in IMG/M
Scaffold IDGa0074648_1092618 Open in IMG/M
Source Dataset NameSaline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1089
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location
Location NameGreece: Etoliko Lagoon
CoordinatesLat. (o)38.4825Long. (o)21.315Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F075422Metagenome119Y
F087933Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0074648_10926182F087933GAGGMTDTSQKTTTSTAKETFTVPEGYDMAGTEFQISDIEVDDHPDGSGDGILTYELYHEDDVDGKELGKIVNEIMLDALERQMIEAKKHDTD*
Ga0074648_10926183F075422GAGGMTLIKLEPTYKKSVYENEFFKNDETGVQIEYEQGWRWGTFYANVTDEEMEALLAHNKHCDDNSVWDDFEISSLTDFEMNDTWDGVWGDIRVWKTGWSDEQREQLKETIEESPDWWDWLMENGFEPQDCETYICGVIDIEKLDKHPYDDN*
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