NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066866_10043949

Scaffold Ga0066866_10043949


Overview

Basic Information
Taxon OID3300005514 Open in IMG/M
Scaffold IDGa0066866_10043949 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV263
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1707
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NamePacific Ocean: Eastern Tropical North Pacific
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027158Metagenome195N
F087026Metagenome110Y
F101070Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0066866_100439492F027158AGGAGMTNPTQTPISELTLAQVISLTQAGLIGLKDGSPVYTSKADKAAKAGATKARRQGVLSEVTEFFASPVGQSTKFFSIKPTSGMFAACARAINANVEASREDILWSLKQLEKQGLARQVGIKGEVVADDRGIDIKRMIVVPVSEVNNFQRRWVHTIEAAPAEDAPAQDDSAE*
Ga0066866_100439493F101070GGAGGMGRGKIRVDPMELEAGDLIVTDGRMSLEVGDVLLAVCKISDLEISQSNKRHPFVDGRRVGDHWRLLSRLGVVEIWLDPYASWVVQVVKGQKKTAT*
Ga0066866_100439494F087026GGAGMKFKPGDLVQVESTQTTGWGDEHHKHLVLVLKTYKSNRPPREQHYPLSAYLDETSNKVEELYEVLRDDGKYLKLGLKDYTWPGARLTNRLVQRSWAEE*
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