NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0066831_10003231

Scaffold Ga0066831_10003231


Overview

Basic Information
Taxon OID3300005516 Open in IMG/M
Scaffold IDGa0066831_10003231 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF49B
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4482
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (73.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NamePacific Ocean: Eastern Tropical North Pacific
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013467Metagenome271Y
F045140Metagenome / Metatranscriptome153Y
F080506Metagenome / Metatranscriptome115N
F087296Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0066831_100032313F045140GAGMIRLLTIFLLSASIAQAVSLEIKLAYQKVTEKGRPYGSPGGIYFEIKDIDPFLPYWVQYSHDLKIWEDLYNFGSFGTNSTSPLFHWNELPPGKCFFRIVQKY*
Ga0066831_100032314F087296N/AMITLTKAARVAQEVNEEEANVEYSEWVLKWQLLESDMMFNVPWKKLYERVGLTKTMSGPSTCRWSIAEKKFWAEYLRFVTEVYHYGGTLDELKRRITDQRIYNSRTDKVRRF*
Ga0066831_100032315F080506AGGAGMTLEEAVRIGKGVDLTTIEECVNNIHSFSPQIFPYNKINEELTELYEEYDNYKKHPETWMEALCGMKA*
Ga0066831_100032319F013467GAGGMSTDMTNWVWCEECLEWKDAGEEVSFVNIEEDSFGKDLMTFLCDKCEKENKNNIIISDKKPRCK*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.