NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0066862_10007537

Scaffold Ga0066862_10007537


Overview

Basic Information
Taxon OID3300005521 Open in IMG/M
Scaffold IDGa0066862_10007537 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F10-02SV255
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4247
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (92.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NamePacific Ocean: Eastern Tropical North Pacific
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017322Metagenome241Y
F026408Metagenome / Metatranscriptome198Y
F077384Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0066862_1000753712F017322AGGAGVSNKFNVKSWKQFQMLNEGISDVVYHYTSGLEKGAKILDQNKFLASGGFTKDVESELGKGKLYYFSTARTAANAYTGTYPQGVIFKLDGRALGQKYKGVPLDYWATKKRSSKKAANLDPGETEGFEAEDRILLDEPYIEDADRYIDEIHFAIPLYRFSKGMFDDKPTRKAGSSIEAYQMKGLKDGVAVAEQRNIPYYIHIDKQTWPQVEVGKKKALTSLSDFMEELEESGVTVNEPPGASRPREEGALQEYGEDEIFLYVQAAQDILAGKEQFEGANVKGKVKYKDEAKRKEDGKVMFRNLTGSPNMQGRFYREIDNPLHNVSSNPKARKTLELLATLMRSTKQKTIKDFETYLNQVYKDNHLDGDRTGVGDT*
Ga0066862_100075374F077384GGAMFQKGDFIVEYKRADRTGGINFGVVMGAEKGFQDMLVLDVVFPMGRLYTFACHCQPYREWLDENSI*
Ga0066862_100075378F026408AGGALNRRGMTLILVLMMGAFIGISAMLLFSTVNLNMMIAGNNRRMNQAKISATSGLSHFIALDLDYNTLRRQAGDLESIQAIPKTQLGDKTFYEVNVHFCCGLSAGQYIVESTGYYMKGDEIISRKTSRSLFVSSQTN*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.