NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066865_10052892

Scaffold Ga0066865_10052892


Overview

Basic Information
Taxon OID3300005523 Open in IMG/M
Scaffold IDGa0066865_10052892 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV265
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1413
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NamePacific Ocean: Eastern Tropical North Pacific
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044142Metagenome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0066865_100528922F044142GGAGVTLDFNRIPILTEEENDLAFKELLKMKNIWFSRTNWQAEENISIEDYVHYYTVGATLYMDARDKGWKYYNRLYPKYNQVLKKKLQWLYDKFLIGLQKELGQCEYEEGLGLPGFNIYEFDDAPSDRKHHRCLHYDAQWWYGKNYFKRKYDDIDFDNQLSYTFSIKVPHNGAAIALWNLPESHYKKASDIKYMIWRDIIHRYETVEYVKEIKESNTIEDPWKFKLFDDNCGDLDQ
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