NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066865_10085672

Scaffold Ga0066865_10085672


Overview

Basic Information
Taxon OID3300005523 Open in IMG/M
Scaffold IDGa0066865_10085672 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV265
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1130
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NamePacific Ocean: Eastern Tropical North Pacific
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005813Metagenome / Metatranscriptome389Y
F006217Metagenome378Y
F027536Metagenome194Y

Sequences

Protein IDFamilyRBSSequence
Ga0066865_100856722F027536AGGAGGMQVSGWRYKVTPIDRVINDCKRRADDAWWDGNDEEARLHEQEQKLYEKDKEEGILWVPNF
Ga0066865_100856724F006217AGAAGGMIEVLLAIAATQADDNAITKYCMSKFEHWTDRASCAQQLRHIERKQEVEALRKFLKENPHYRYPGMALPNGKIKPLDVCWGSDKTYYIGSDKQKKGRC*
Ga0066865_100856725F005813AGGAGMKLYKNSNGVWAGTQADARKYCGKDYTTVDVPTDKPNLLGFLNLNQVGSLASSPALEEVRTGEPDKKAMSWFRWAYDCMMRGQYDDAKEMLKKGLTDDRSTTSDSSHTS*
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