Basic Information | |
---|---|
Taxon OID | 3300005524 Open in IMG/M |
Scaffold ID | Ga0070737_10000110 Open in IMG/M |
Source Dataset Name | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen10_05102014_R1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 196113 |
Total Scaffold Genes | 219 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 135 (61.64%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire. |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Pennsylvania, Centralia | |||||||
Coordinates | Lat. (o) | 40.7999 | Long. (o) | -76.3402 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F038372 | Metagenome / Metatranscriptome | 166 | Y |
F077154 | Metagenome / Metatranscriptome | 117 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0070737_1000011059 | F077154 | AGGAGG | METSTAITSDDLDLEPVFGALDAETRERVLAELRRGDEALRAVAAELGIESEGLVLSTYPSGQTEVAATLRAAGGKLSFEVGLRPRNFFSPHNPWRPGQPPRPMQTDAWDVDGAVNVMVRRLVGQHKYTIQEQAVELETTRYESPVEAAAALAACCERLAELARSREATVEAWAAPDPSAPR* |
Ga0070737_1000011087 | F038372 | GGAGG | VRRRLLTALLVALASLAGSVFYRRRTQRRLERVDLYAEDGSMASVADGSPGAERLLTLARELLAR* |
⦗Top⦘ |