NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068876_10000190

Scaffold Ga0068876_10000190


Overview

Basic Information
Taxon OID3300005527 Open in IMG/M
Scaffold IDGa0068876_10000190 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)47410
Total Scaffold Genes92 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)39 (42.39%)
Novel Protein Genes15 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (33.33%)
Associated Families15

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001018Metagenome / Metatranscriptome804Y
F001120Metagenome / Metatranscriptome772Y
F001165Metagenome / Metatranscriptome760Y
F001807Metagenome / Metatranscriptome631Y
F002333Metagenome569Y
F002738Metagenome / Metatranscriptome533Y
F002985Metagenome / Metatranscriptome515Y
F003601Metagenome / Metatranscriptome477Y
F008128Metagenome / Metatranscriptome338Y
F013517Metagenome / Metatranscriptome270Y
F015201Metagenome / Metatranscriptome256Y
F020341Metagenome224Y
F030408Metagenome185Y
F043890Metagenome / Metatranscriptome155Y
F059883Metagenome133N

Sequences

Protein IDFamilyRBSSequence
Ga0068876_1000019017F008128GAGMEPVVVPRLTVSFAVDIDVEYNSFGGKTADEIADALQDDLDDLLFELSPYVKGVYTSTTAVNFND*
Ga0068876_1000019020F001018N/AMAHITQTKLEDLNIIKLYEHYGALERSLPLLTPESQELAKAELECCANLRSEKIDRVHYAMAAHEDALERIKKEGDLIAQAKRHHESQLNQLKNLLGWLRRALPLDCNRIQGRNYEFVLSKKKDLTVEITSDPEFWHTDERKKYCIQQEVTTTKRIVVRSMSGEVLSDRTEPKTKTETLPNLDAIRNAYQNGEHLPTGVKVEQQYAIRKNRLFSTKWMEAQAPEYFGELLPEPDSAD*
Ga0068876_1000019021F013517N/AMFESLFAAVLPVVKDLLWAAAGMALTYLLNKIQTQFNTI*
Ga0068876_1000019022F002738N/AMLPLSAMSIDTYGLPSEQYEEFFEDNLQFSAKLYVKACQILRDNGAGAIDFKTTLDLYQEAIYGTNDDCRKYQKVNNPEAVKDNDLFGLTPSREELMEEIQAVNVKVEALVDYIARLVETTTDGLDRLAEAMDKDA*
Ga0068876_1000019023F043890N/AMQKTYLEDMLNLNSIEKLQIEYIDEEDGTGTIHIEWDDTDPDLQWWTDLGPEGQETFIIDALYAALECYVD*
Ga0068876_1000019026F002333N/AMSIQAQTELHSAQALIYSRSNIRRAYPEFDDTAIAGIYLRGDNCIVVRHDGSEQSYDRTLIKARFQTYTNRLKDFFSYLGPNYRGPSVWHNNAYILFKGWHYTHALGHLTSNAKLQAHWADKFIHVSDPAKITALLQSDQTDLGHLVAPDGLRLPNRPLDMDTELDDSQEQQPLFGKPSCSCGSFQRQLNNLSAFQEEIEGFKPWCIHLTWFNKYRELLCKRTDVRNASPSGTPDKCVAWWYAPTADHVSDGRFVLLHTKSGAQAPLTHWRTYKPKEVFTQHDAWDLFFNMMEAGYTPFPGTSLPQLKAAIKKQ*
Ga0068876_1000019035F002985N/AMSYVIAAWKDGRPFAITACQTSNQFHLIPLDSEVALNKIFSHPYRAGAQQILTWINKNDSSLASENLQVRDEAQFRK*
Ga0068876_1000019037F020341AGTAGMKGFSSTQKHTRSSSYWVAAYVKDNDDEPINIHKKILIYKQGQDKEALMTNYCNSIMKINRNIWEILVHQGPSEIPDSGDQIVIRLSREPFKGSHILK*
Ga0068876_1000019043F015201GGAGGMNKALIIYLVDKKKKAARKDVESKHAVKQLEKQTTATF*
Ga0068876_1000019050F003601GGAMSDYTDEQLLAMAMANIGEYITDNSPQYILIEDDPRNEDDYDTWSYGTEPLPHDHTWHSTSIDVEVSPSQAD*
Ga0068876_1000019052F001807GGAMTILAIEDTHFTDTHVTVTAVVEDMRLLYRATRFDPEEWAPALCTTTVELDPEEPIPLDEDGFAEYLDHLDPQWQLVDMSEE*
Ga0068876_1000019054F001120N/AMTKKSIISFDRTIHGVNITEHGIKSVSKAIKLGPFQLTLNANPNGVKGSLSIPGTGLSIPNIKLI*
Ga0068876_1000019056F001165N/ALTTLVDSTHLPHTQLMSSNKPTIPNSVDPQKLQFMQLTAKMKESADKYGVGFIGGFVASDGEVFYMSNMNDEDTQALMPDSLK*
Ga0068876_1000019060F059883N/AMTEDNKRYHLIINVDEKYAIVNALAFYHAHHTLGSLLDEDEREQYELAFKEDGPTLVDTLATRVANTF*
Ga0068876_1000019063F030408N/AMRTHIALVADRSGRYAHVWGTAQTFSLFHDQLEDIGCEVIENQSDDWDGCTRDEIAEDCLSVHQLLNDSDFIPHD*
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