Scaffold Ga0068876

Basic Information
Taxon OID	3300005527 Open in IMG/M
Scaffold ID	Ga0068876_10006471 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005527 Open in IMG/M

Scaffold ID

Ga0068876_10006471 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7963
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	21 (87.50%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

7963

Total Scaffold Genes

24 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

21 (87.50%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location Name	USA: Ohio, Lake Erie
Coordinates	Lat. (^o)	41.69957	Long. (^o)	-83.2941	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Ohio, Lake Erie

Coordinates

Lat. (^o)

41.69957

Long. (^o)

-83.2941

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011756	Metagenome / Metatranscriptome	287	Y
F018703	Metagenome	233	Y
F020494	Metagenome / Metatranscriptome	223	Y
F022400	Metagenome	214	Y
F024719	Metagenome / Metatranscriptome	204	Y
F029021	Metagenome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068876_1000647110	F024719	GAGG	VSNVIELPNRGKITIVFYEVSDSQNIAIWGGENPVEALKWYRNSPAGSKIWVSQYEVDEEDAELMLDSVEITPIVLATITDSIDRWSR*
Ga0068876_1000647111	F018703	GGAG	MKREVEQRIETAKAQAVRQRNYRRARDRALARLSNDYPNVYRTYLEEEMEADESMGKKWLDITGNTRSANTRSS*
Ga0068876_1000647112	F022400	AGG	MRRTTIERSQRPTLRLVSGGVGERASAYSPFGPVRAGLITTQRTSEDQVLTELLNSLERKIVELSIKSCEVLNIFLSDTEHLARRTGSSSRTDITDSI*
Ga0068876_1000647124	F020494	N/A	IDLYIPETGDVIDWKTVKVKNLSYFPSLQQRWQVQVYGYLLDKSGKGSPRTVNLVAIARDGDERDVKVHSEPYDPKLAEDALNWLSAIKESADAPGPERDQSYCKFYCKYFDESGEMGCTGLKKERIKEDEVFIDNPEVDTSALKYLQLDAKIKELTTERESLKAALEGFTGSTNSGVSITWSTVSGRESVDTEEVEKLLGFVPKKQGQESTRLSVKHTGGK*
Ga0068876_100064716	F029021	GGA	MKELCQFCGWEIARVDWYHRYNGKLICDNCVMDTMSEREREEVR*
Ga0068876_100064718	F011756	AGG	MSEPRYLMGDEYAHTGGYEDLVNCKECAVEYDRTEYRSDTCSDCEDEMIKRERASK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0068876_10006471

Overview

Ecosystem & Geography

Associated Families

Sequences