NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068876_10007207

Scaffold Ga0068876_10007207


Overview

Basic Information
Taxon OID3300005527 Open in IMG/M
Scaffold IDGa0068876_10007207 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7509
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (80.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000468Metagenome1102Y
F002044Metagenome / Metatranscriptome599Y
F002357Metagenome / Metatranscriptome567Y
F005587Metagenome / Metatranscriptome395Y
F028151Metagenome192Y

Sequences

Protein IDFamilyRBSSequence
Ga0068876_1000720710F005587AGGMTSYLVDAIKLLKPTAEFSFNDNDYSTIKWDVLEGDAPTQKEIDDAIKTVKAKEAADAKARASNKTALLERLGITEDEFKILLS*
Ga0068876_1000720712F000468AGGMTVWTPDWKLTVAGVDYTDIAISDIAHQAGRDDIYAQPNPSYLQVQLVALSGQTLPFQINDSLSLQVKNSSGSYVNLFGGDITDLTVEVGATGALATVVNYTILAMGSLVKLAKEIYTGTISQDEDGNQIYDLLSSVLLASWNDVPAATTWATYNATETWANAGNQGLGEIDQPGLYTMENRAADPDTIYNIASLIADSAFGYLYEAPNGDIGYADADHRQTYLLANGYVDLDARHALGAGLSTITRSADIRNDIYINYGNNFGSQETASSPQSIALYGYKSESINSTIHSAVDAQAVADRYIAQRAFPLAAFQSITFPITNPAIDNSDRDNLLGVFMGQPLNIQNLPTQISNGVFEGYVEGWRWSTRFNELFLTINLSPVAFSQVAMRWNTVPITETWQTIDPTLTWEYATIVA*
Ga0068876_100072072F002357AGGAGMAFNLEDYEDVATLNKWFIANYPMGRSDLSVISHDPEKGYILIQSTLWRDSKDAAPAVSNVAFGSRETYIPNMKKFYVEDTATSALGRAIILLKGSDKTATKDDMRKVESNPSFKEKLEARQNMYGKPGSKSAQIETILRDSFEANKKPEPVAWSVGDVVAEIGASTPNEPPACEHGHILKQGISKGGKPYYGYVCKAKQCDAKWAKLTANGKWYFEGGE*
Ga0068876_100072074F028151GGAMNTWLELRDLGLDVAAVMLGIGVIYWIIYEIRDTAFQNGYWKGRADGWNMHRRMTNIKAQSDEVFDYDKN*
Ga0068876_100072076F002044N/AMANTRKPSKRKKINRRIVRQTPEPLTKIDQHYMALHECYKAARKAGFTPEHAFWLMTEQKTFPNWIVGDGGIIPSIDPTDDEDDD*
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