NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068876_10257829

Scaffold Ga0068876_10257829


Overview

Basic Information
Taxon OID3300005527 Open in IMG/M
Scaffold IDGa0068876_10257829 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)998
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018323Metagenome / Metatranscriptome235N
F055419Metagenome / Metatranscriptome138N
F100356Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0068876_102578291F100356AGTAGMEYRTLKNEIELLESVQRLMNEVNTELDFNGNYITLLELFSTMKRLKIIQPKWIFKVARTPPLEENIF
Ga0068876_102578292F018323GAGMCNTKYNDEIVELIKSLEENSVDLTSAMDTVRVLDELELPLFEHILINQICKDLNTISTEINHDQEDERVFRKIFHKVRVLKLRNPEWKFKHRPKKSTYSRNRMIKEERLTLSQEEARELANFKKETEIINQIETEKSFEENDHLFKLIKESRFTRIGRRNWLSFYRFPDLRKITIYNEKNFLCKVEGVRRKYSRLKWSIVL*
Ga0068876_102578293F055419N/AIEEELVKHFPREEFAEIHIEVWRTYEETGALQIHKLIEAKYPGNSRAGQRAITWFKIAKVLPHRVHRNVQH*
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