NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068872_10117019

Scaffold Ga0068872_10117019


Overview

Basic Information
Taxon OID3300005528 Open in IMG/M
Scaffold IDGa0068872_10117019 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1577
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F000441Metagenome / Metatranscriptome1136Y
F000868Metagenome / Metatranscriptome853Y
F005504Metagenome / Metatranscriptome398Y

Sequences

Protein IDFamilyRBSSequence
Ga0068872_101170191F000441AGGAGGMKMSDAYINDQLNKAQQLLWGGSETENIEAHNIISKLIR
Ga0068872_101170193F000263AGGMNNEDIGLPPHLQRMVNYDISGLDIMHGELKNLMLIWEKELEKAQAVEDESEEAMDSMERKYCEGFLDSLTALYNLTYQLSFAIGARNDK*
Ga0068872_101170196F000868AGGCGGMSFLENENQMVIDAEYSYIGEQLVEDWVNSNLDEGQLYADYCFADMAESNYLKGRFNQFYDLKPGDQYYIEWDEEK*
Ga0068872_101170197F005504N/ANLVPNSLLTLEYEEETGWGGEYEILRGEVKELAEWENRCYACQSFDTLSYCENDCGEFCAECNQGSWQDEEAMKECQTHMVLLDTTEKAEV*
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