Scaffold Ga0070741

Basic Information
Taxon OID	3300005529 Open in IMG/M
Scaffold ID	Ga0070741_10000040 Open in IMG/M
Source Dataset Name	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	470804
Total Scaffold Genes	416 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	297 (71.39%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

470804

Total Scaffold Genes

416 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

297 (71.39%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location Name	USA: Pennsylvania, Centralia
Coordinates	Lat. (^o)	40.7999	Long. (^o)	-76.3402	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Pennsylvania, Centralia

Coordinates

Lat. (^o)

40.7999

Long. (^o)

-76.3402

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001250	Metagenome / Metatranscriptome	737	Y
F025537	Metagenome / Metatranscriptome	201	Y
F038317	Metagenome	166	Y
F045173	Metagenome	153	Y
F077836	Metagenome / Metatranscriptome	117	Y
F086052	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070741_10000040111	F001250	AGAAG	MQWHIINHRDYIDGPFDSYEAALKEACALGKETRAEPRVRRRAENFFIYKAPYDRKEHWQPEYWICTKEAAVAQGVPEDIFSQPLLETWR*
Ga0070741_1000004012	F086052	GAGG	MLVGYVSLVFEIVSSVLLAVVIVFLLRSSYRRYPLVLLYCLLQLTATVSEEYVWRVLGASRDSSLFRMLYWTDEVVLDLVLFLMVISLTFRALEGSPLRSAIGRFLAAVVVIVLIVPFVAFSSRRFGTGWYNSTSQLLNFGAAIMNLGLWTALIGTKKRDPLLLKVSAGLGIAVTGAAIAYGLRKFTTGGGMERDLANLFKTVTYLASVLIWCWAFRPSAQKSKPPAAKVGPPVPS*
Ga0070741_10000040138	F025537	AGGA	MPPTALTKLEREVITDSMLKIQSIQASLSQIDGTKLLNSEEIYKCLRTAGNSFRDALRLGFDKTRRPPKR*
Ga0070741_10000040179	F045173	N/A	MIATPDDARLLFDRWMEESSPLKVRLWSSGLFFDAVGTIAGSRPENLEIGGHSWKLTIPIAGANFSFADPREIRIASVREAESAQYEFGIALDLPNGDRLIIMELKGSPEPSLEPEEET*
Ga0070741_10000040231	F038317	GAGG	MRNRLLGCISGGLLGFALSGTLMETLGLSGTVGTAFCVVAGVALGYAVGVLIDAFKAKPDSLLPGQLD*
Ga0070741_10000040381	F077836	N/A	MASWTDAVIVTLIALGAAVLVGVLGYLADKKGTEDH*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0070741_10000040

Overview

Ecosystem & Geography

Associated Families

Sequences