NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070741_10000221

Scaffold Ga0070741_10000221


Overview

Basic Information
Taxon OID3300005529 Open in IMG/M
Scaffold IDGa0070741_10000221 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)216785
Total Scaffold Genes247 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)159 (64.37%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Associated Families8

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002755Metagenome / Metatranscriptome532Y
F002992Metagenome / Metatranscriptome515Y
F003246Metagenome / Metatranscriptome498Y
F004652Metagenome / Metatranscriptome429Y
F004844Metagenome / Metatranscriptome421Y
F022478Metagenome / Metatranscriptome214Y
F026338Metagenome / Metatranscriptome198Y
F039734Metagenome / Metatranscriptome163Y

Sequences

Protein IDFamilyRBSSequence
Ga0070741_10000221109F002992N/AVSLRSAPVVEQASLPEGGGVSVWVGVPDDPYIERSELTTVDVQLRRGEAVLASISTVLDPDQTSEARQLALEVKAALEAGEIGLHADDLEPFADRLR*
Ga0070741_10000221151F004844GGAMPTMSRPGERISVFLFAVLLLALFVALTFAAGYGLGKILL*
Ga0070741_10000221172F004652AGGMSETIQIDIPRRGIGSDLREALAACGMHAEIVDADDECALQVRFAEEEHDRLLNGAIAAIESYLSERMLPLVVQRADGRAVVRPPGD*
Ga0070741_10000221180F003246GAGVISTRQTMRAGEAVAGLLAAAALFLGALQLFYRPFRLAPAALVLLLVATVMSREQHGLIRLAFAVVGICFVAGAALQVVTHHPLF*
Ga0070741_10000221194F026338N/AVNWRSKRSVVLLVAAVCAVVFAAGMAAAWHNRHETICRDGRPPASQRGGLLGQIVYRCHDGQLVTTPG*
Ga0070741_10000221221F039734N/AMELNLLAPVRHWEARRALKVARRRADAELLASRLPSPRLAWRSAELVAAGNRVSLARSVTDVVHAADERLLLGASPLHRATVRDCRSELLALASRLCDVASPVAPRGVLLVERLLVDGESPLYGDGGVDRLRAEVARCDEELTARRGAD*
Ga0070741_10000221223F022478N/AVRNRVLVYTEALDVAAEGAVWYARRIGGGTFEALHVPGRRTDTGIHARWFDFTGGEPRLDVREPGSDATAAVLGEIERLRSESDDTIVTVVLPEQFARRSLLAAAQREQFRLKLRLLVEPRVVVADVPTVTPKRRPEGRVPQRLVVRVLAGDDDGATRRAVAYAGMLGGDDVRAVHFGTRDWEEGLALAVDDAPLDGRLGDALLAYLRGLTAEPSSVVNVVLPERIHPSLRWLRSRRALAIKRLLLFEPHVILSSVPCRD*
Ga0070741_1000022146F002755AGGAGGMPPRKVVTGVLLAAGSLAGSVLWRRRAARKRERVDLYAEDGSVHSYVEGSDEATGLLAIAHELLSPA*
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