Basic Information | |
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Taxon OID | 3300005529 Open in IMG/M |
Scaffold ID | Ga0070741_10000675 Open in IMG/M |
Source Dataset Name | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 117362 |
Total Scaffold Genes | 122 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 84 (68.85%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire. |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Pennsylvania, Centralia | |||||||
Coordinates | Lat. (o) | 40.7999 | Long. (o) | -76.3402 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F008664 | Metagenome / Metatranscriptome | 330 | Y |
F013143 | Metagenome / Metatranscriptome | 274 | Y |
F020395 | Metagenome / Metatranscriptome | 224 | Y |
F035105 | Metagenome / Metatranscriptome | 173 | Y |
F035980 | Metagenome / Metatranscriptome | 171 | N |
F063110 | Metagenome | 130 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0070741_10000675114 | F013143 | AGGAG | MNRFVLGAIVGAVVVYVWGEDLRRFVEGRGRDARLAAADRLRSVQSTAEELLDHAKERVSGTLQAGQDALHPDRAPRSSR* |
Ga0070741_10000675121 | F008664 | AGGAGG | MLGRLVMAAIAGALVWKYRDSLREYAKGNQAPAREKLADLLQTVQQRSETLLDRTKEQISTRLDTAQDRLRRGGFEPRQEDVPSSSFRG* |
Ga0070741_1000067532 | F063110 | GGAGG | MREVGWLVLAIVVGILAAVGWVARERWIMRRRRR* |
Ga0070741_1000067540 | F035105 | AGGAGG | MIRYKFCAVTAALGGVLVAVGPAAAECAWVLWSQVYDPRPGAWQLQTAYPSVGACTKALDQREKEGRKAVYVTESGGKIKGLAERRADTDLLLRYGNDDGAGGIAWQCFPETIDPRGPKTK* |
Ga0070741_1000067545 | F020395 | AGGA | MSHEEELRALERTLAAYRETLKEVNRLGGDGMETVRTEWLQRVKELELQREHVSHVVRRARRGRL* |
Ga0070741_1000067576 | F035980 | GGAGG | MRIPTIVVLLPVAALLVALAPVAASAQPLTLKTSPAPGPVPGDRVAPAVPDRDLYPQRPSLPQTPHFIGPLSRDSATGRAGVAGYTAANPAVGSRVAGDHDNPGWPSIGVVFEWGRSHRAN* |
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