Basic Information | |
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Taxon OID | 3300005529 Open in IMG/M |
Scaffold ID | Ga0070741_10009981 Open in IMG/M |
Source Dataset Name | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 18137 |
Total Scaffold Genes | 18 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (72.22%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire. |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Pennsylvania, Centralia | |||||||
Coordinates | Lat. (o) | 40.7999 | Long. (o) | -76.3402 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000624 | Metagenome / Metatranscriptome | 977 | Y |
F000739 | Metagenome / Metatranscriptome | 913 | Y |
F007488 | Metagenome / Metatranscriptome | 350 | Y |
F099605 | Metagenome | 103 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0070741_1000998112 | F007488 | N/A | MQIREYKSEDLAALRAIHAAQGFDYALPDPGNPLFVTKLVLADDAEQTLGAALLRLTAEAYLLLDPRMRGPRQRWQALLALHEAARRDASVRGLEDVHAWLPPRIARTFGRRLERLGWVRDDAWTPYCKKLST* |
Ga0070741_1000998113 | F099605 | AGGAGG | MPSTTNSAFWDFNPSDPVTLTASFIFDTEDTQDSAPVATALAAIQARIAAASITATQPDGATVAISVRI* |
Ga0070741_1000998115 | F000624 | GAGG | MPLHWYGFLAAAVSGLVQFSLFLRWLHRRMRDDEIVHAFVRDLAVTHLPHIYSALRQIADQKGISVAEAPLVHFVDFSGHRRRR* |
Ga0070741_100099814 | F000739 | GAGG | MTRIEIWLRGIFAAAISGAAGGVLTGFAAVGIDPQHFNLQTGTGATFRIGAAAALINSVIGVAAYLQKSPLPEEGK* |
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