NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070679_100826638

Scaffold Ga0070679_100826638


Overview

Basic Information
Taxon OID3300005530 Open in IMG/M
Scaffold IDGa0070679_100826638 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)869
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022478Metagenome / Metatranscriptome214Y

Sequences

Protein IDFamilyRBSSequence
Ga0070679_1008266382F022478GGAGVLIFAEALDVAAEGAVWYCRRIGGGTFEAVHVPSKSTDTGIHARWFDYTGGEPRLDVRPPGSDPTEVVLEKVAALRRDREDVVVTVVLPEQFRKRSLLVAAQRAQFRLKLRLLTEPGVIVADVPAVTSERRPEGHVPDRLILRVLAGAPDPRTHRAIEYAQGLPGVDELRALHFGPRDWDDSEVGIPVDDAPLTGRLGDSILTEVRKLTADPAIAVNVVLPERIDTG
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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