Basic Information | |
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Taxon OID | 3300005531 Open in IMG/M |
Scaffold ID | Ga0070738_10006090 Open in IMG/M |
Source Dataset Name | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen12_06102014_R2 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 12830 |
Total Scaffold Genes | 13 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (84.62%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire. |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Pennsylvania, Centralia | |||||||
Coordinates | Lat. (o) | 40.7999 | Long. (o) | -76.3402 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F022505 | Metagenome / Metatranscriptome | 214 | Y |
F029879 | Metagenome / Metatranscriptome | 187 | Y |
F057229 | Metagenome / Metatranscriptome | 136 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0070738_1000609012 | F022505 | AGGAG | LKNKMATLLVIVSAMLIGAGMTWQQRLLFVGGIVFGLVVEALPELVDRLKETLTDKWRLSQVVKRSKAA* |
Ga0070738_100060908 | F057229 | GAGG | MFGLVFTTLMLIVLEGCFVCWLHHMPLPDRPFVSSGFLAVPPWYQKPRFEITLLLMIAAGMLFSVCRGLWRICREREQTSSAEIIRSLRRRVNTAASVAALAGVNLALASWLR* |
Ga0070738_100060909 | F029879 | GGA | MLTESELRQGLRRRSPIFPDVTVDQPVTLQEVDAAFRAGRRSRADIGITNHVLNLFLEPRNPFEPQRMRKPKMEAVVFGTLLALVVFAVLGFNIAAPRP* |
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