NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070734_10000026

Scaffold Ga0070734_10000026


Overview

Basic Information
Taxon OID3300005533 Open in IMG/M
Scaffold IDGa0070734_10000026 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)454727
Total Scaffold Genes404 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)315 (77.97%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)9 (100.00%)
Associated Families9

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000426Metagenome / Metatranscriptome1154Y
F000534Metagenome / Metatranscriptome1044Y
F000595Metagenome / Metatranscriptome999Y
F001318Metagenome / Metatranscriptome724Y
F001431Metagenome / Metatranscriptome696Y
F001800Metagenome / Metatranscriptome632Y
F002898Metagenome / Metatranscriptome522Y
F007325Metagenome / Metatranscriptome353Y
F008269Metagenome / Metatranscriptome336Y

Sequences

Protein IDFamilyRBSSequence
Ga0070734_1000002612F002898GGAGGMARSDRKRSRWKSLIDFVKRMLGRRPAQPGDPYAYVMAPVRGGPRGRSGAAVAEIEDDSFRIFPPRR*
Ga0070734_10000026129F001800AGGAGMKSTFKTLTALFSVLLAGALLTATAVAQLGASGAGNSRDNGDKLIQVAELEQQIHATFHAAVSVHDPVNGDSSEVITQRIRQVLSIWAPDAELTTAAGNYIGNGDPDNPETCPLPSGDTSATGQQGTLCTFFKYVAGGLQQANKFVSLSPAFKTKYVPVKDRDGQWKSSVYFECHYFDVSLDPATGQPSWTAKSHVDLDGEAKKVDGRWLLTKVSSSAVSVPVP*
Ga0070734_10000026185F007325GGAMQGLRTTGASCTALAVILLCTAALAAEPSVEELKARFASANIGERPRLCVQIAEKQETEANRLYSANDFDKAQNTLSDVVAYSELARDYAIQSHKYQKQTEIAVRGFARKLGDLMRTLPKEDQGPVHDAINRLQRVRDDLLSAMFPKGAK*
Ga0070734_10000026235F008269GAGVQPPDAVRLLCAVFFAILLFTTSSRAADPATITFSLDFPQSDPEHYSIAVNSDGHARYECTALIATGSDDHETYQTEFTLSEPTRARIFDLAAQAHYFSGKIDSGNRKLAFTGAKKLTYSDGQRNNTGEYNVAVQPSVLQLTTLFQNLATTLEYGRRLEHLHRYQKLALDDELKRMEEQARHGELAELQAVKTTLQQIYDDQSVMNVVRARAERIMEMPPSSTQR*
Ga0070734_10000026253F001431GGAGGMWSIQDVSAEELARLLHHYRGALADDSHGQAADGSASSWDRTSPSERKLMVAAARLALLELATTASPAEHRPYFAMPGKADWGC*
Ga0070734_1000002628F000595AGGAGMDGLTGLAAVVMIFGMPTAVLGMYTFYRVRKLRTEERMAAMQRGVAIPMEPELPESARSRRYGILSIAGAVGYMLAFSILAKYEPDAIEAAAFGAIPFMLGLGYLLDSLLIHRDGKATA*
Ga0070734_1000002655F000534AGGAGVHRLHGRGVRCKAQTLMPQEISVSYQAIKSKVYRLIDALVVGEKNEAEVQESIRRWWDLIHPADRPVAQKYLLMVLGRSASALDAVGDGLFAAGGAQAAHHEDAPPVSSKRMRLIDRAVRETGMRSTV*
Ga0070734_1000002656F001318GGAGGMKKSLWILTVVMLFSVLAPSQTTASLNAGKSSSFWNDPYWHEAAPDDRTFFPKDMFWGWAQFDLAPPHNEIDPNLCAGNASQLGGMNDPCTMFARYMLSGILEVRPFGRGPLRRLMVYGQPAFLFGKNIPKTLYTWSPEAIGIEHSWGVGIYVTKGFEFRVTQHFLFDRLGARSGNVGVGDLGTSGPWGRYVTVGVRKSFGTRRW*
Ga0070734_1000002676F000426AGGGGGMKDIHEVLRQKQSKYAQLGKQIEMLQQAAEKLREVAPLLAENDDEDNAVLGEVEEGSGSADAMAAKAGANSSAASAKPRPAAPRWP*
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