NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070697_100000010

Scaffold Ga0070697_100000010


Overview

Basic Information
Taxon OID3300005536 Open in IMG/M
Scaffold IDGa0070697_100000010 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)178522
Total Scaffold Genes189 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)113 (59.79%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008404Metagenome334Y
F009086Metagenome323Y
F019208Metagenome231Y
F032765Metagenome179Y

Sequences

Protein IDFamilyRBSSequence
Ga0070697_100000010170F019208N/ALSGFTPRLPLVSEMPPTEEQLRRLKNTVMGAGYRLSQLAQSGQMHAAAAAELASISRELTEAVARLERLLAALQQDR*
Ga0070697_10000001022F032765AGGAGGMKVIVNFANILVAIILLLVGLSVFTRHRLASYVVGGFIMVLAALSILAFLKILNVSGGPITIG*
Ga0070697_10000001031F009086N/ALAKNLAHASSPDLELPRNLGGFRARIHLPFRSGFNRFIRVLGMLTLLASSLGLLAAVAGFALSWLSMMIALLVSLVLIGFSVRPSLRKPKF*
Ga0070697_1000000108F008404GGAGGMKNAMGLELTESERTLVECYQGLVRVLKESKDLAPFERRNALKAVAALWQVVNGLDLDPGNLYEIGA*
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