NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070730_10000025

Scaffold Ga0070730_10000025


Overview

Basic Information
Taxon OID3300005537 Open in IMG/M
Scaffold IDGa0070730_10000025 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)190109
Total Scaffold Genes187 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)134 (71.66%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001194Metagenome / Metatranscriptome750Y
F042487Metagenome / Metatranscriptome158N
F047241Metagenome / Metatranscriptome150Y
F057553Metagenome / Metatranscriptome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0070730_10000025122F047241N/AMKESKANSGLLRALALSHEMFAAAERGDLRSVELLDAERLELLKCFRLETKVVNAAADRALLQQISQLNDRAIGLLEHQRRSKGREMDMAAVGRRAMAAYSSIRLQR*
Ga0070730_10000025179F057553GAGGMSEVDRVSNSGLYPALPIADRRGSNDDKERRQHSDKGPDKPAAKSTDTPGAPRPPKSQIDEYA*
Ga0070730_1000002525F042487AGAAGGMNKWSSVAVSAALLVAGVGASVSAEAHPYLTVGIDVPPVAVVGPFGHALVYCGPYCYEHGRYWRRDYDRYRFDRFPRERWYRR*
Ga0070730_1000002551F001194N/AMSVRRVLLGTLAGLGAIIGYGCLLVFLYLVGTQAYRFFREGEWMHVGMGDGIRFGLVHCCVKEGAGGKLAVFLQWWESPATWLGLHKVFEVIPASLALFAVSMVGNSLFIYCRDRLQQR*
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