NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070730_10011323

Scaffold Ga0070730_10011323


Overview

Basic Information
Taxon OID3300005537 Open in IMG/M
Scaffold IDGa0070730_10011323 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7286
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (84.62%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011259Metagenome / Metatranscriptome293Y
F011803Metagenome / Metatranscriptome287Y
F023966Metagenome / Metatranscriptome208Y
F037883Metagenome / Metatranscriptome167Y
F044745Metagenome / Metatranscriptome154Y
F070583Metagenome / Metatranscriptome123Y
F081702Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0070730_1001132310F023966AGGAGMDHDNRVLTRRGARELTQDEVESVQGALKVAHTLTPCFIDKKQQLLNGDQAIGECGP*
Ga0070730_100113233F037883AGGAGMSNQNEPNRVLLRMGARELTEEEVESVSAAGPPCQLTFTHLPKGGSDEDTFCP*
Ga0070730_100113234F011259N/AMSRQDNRVLVRTGARELTIEEVDQVSAAMAHTNVCTAIMATSTVTGPGDGDGCSDTDRDANFI*
Ga0070730_100113235F070583AGGAGMNDESRVLIRRGARELDREETKKVSGGLNTQTACTWDPDLGGRDGDGPPEC*
Ga0070730_100113236F081702AGGAGMNEQDRVLIRRGARELNSEEVERVGGGYNTLVITFGPNGRDGDGLLGDS*
Ga0070730_100113237F011803AGGAGMNDQNRVLIRRGARELTPTESALVNGGFITFSVCTNSPSPDGDQHVGEVGC*
Ga0070730_100113239F044745AGGAGMNNRNRVLIRQGARDLNEHEVAVVSGGLTTLTACTLAAAGTLDGDTFHSECGSPDQ*
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