NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070731_10000005

Scaffold Ga0070731_10000005


Overview

Basic Information
Taxon OID3300005538 Open in IMG/M
Scaffold IDGa0070731_10000005 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)549474
Total Scaffold Genes512 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)338 (66.02%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000238Metagenome / Metatranscriptome1494Y
F005270Metagenome / Metatranscriptome406Y
F009711Metagenome / Metatranscriptome314Y
F021815Metagenome / Metatranscriptome217Y
F045224Metagenome / Metatranscriptome153Y
F077661Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0070731_1000000528F009711GAGGMTLAIILIIAAVVSLAFILGIAASRSLQISHRDGRSGQIEPIDVEAFRNLTDPAEDDYLRTRLPASEFRTVRRERLHAMAAYVRTAGRNAAVLARIGQNAMTTGDERAAEAARQLVDDAVLLRKNAAFALFRIWIALAWPNSSFAAAPVLRGYERLSGRAMLLGRLQNPATPVRISATW*
Ga0070731_10000005322F000238AGTAGMPSSSAVRAPRWYTIPVRAAVVTFVSTLLCFAVILLFAILGTAILAAMHGVSPDMRVAYRHIALPISMVAGCVIFVVALVTEIRHYRQAKTLTAIERMG*
Ga0070731_10000005408F005270AGGAMEQNLTDDVSGEDLVSIVASLEPDQLISEKEKHHCPRRQLTTTEMILFWALRLYLVFMFGVVLYQVWTGVR*
Ga0070731_10000005443F077661N/AMTRHIPRRSVGGISPLALKIALCRSKREIACLRNFVLGTQGLSAGSRLFEVTDIHSEETHTRRRFPGALRWLAGLILVAIAGSWLFLYIDSVYQRRRAESLFADLRSLDFSTAGFTEVRDIMVRNGSRPGATCNPQNCTFRLQIMTQLPRIPLLGRKAIFLYTTLPYIGLRSWIVYAQFDVRDGQLDKSGASVWEYRMERVDYNAYRQFIPLGYAVETQRNAASFDERPCRGQEYQVSVSHGGFKIPSDVLGTCVVQSAGTSVKRAFDVHLSCLNNPFRNCRFNELAPSAWADYSAVDRTEARDPYRYR*
Ga0070731_1000000556F021815GGAGGMKSDHNDNRSNEVRVELKYCEHCGGLWVRERGAGVVYCDNCQAKVSDLPIPKKKPGKVMLPIRSHTAVEDYGLEHEDDDLGYDDLEYEDETEFEAAGGVA*
Ga0070731_1000000575F045224GGAMSDEDLSGKPRASSILKQGRTIPYTAKDFQLEVLAQLGEMQGTTQSLQQSLAAAVKGQEERGKLLRFDGRTLIAIGAIALSLTGYVLQDARNSSKRDADIETTKARVLRLEEIAATNTEGRVRTEVELGELREGQAEIKHMIEAHDSESKKLLPKK*
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