NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070731_10000103

Scaffold Ga0070731_10000103


Overview

Basic Information
Taxon OID3300005538 Open in IMG/M
Scaffold IDGa0070731_10000103 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)157608
Total Scaffold Genes173 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)118 (68.21%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003586Metagenome / Metatranscriptome478Y
F003735Metagenome / Metatranscriptome471Y
F071694Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0070731_1000010339F003735GAGMGATREIEPAIALRTRTHEDPGIEVRINFGVFAGRTVTPAEIDELAGRVSGLVPAFAIVAEERHEFGGSVEASVHQVVVEVPREHASFEADVLAERIVLEANGWALECIEARHAEL*
Ga0070731_1000010350F071694GAGGVLLCVAAGLAAMVFVTPSGSASGGCPEHAATPQTARLTIKLLHIVDKPIGTRACDLAYGPIWDLAYKTRPGMGLTMVIDAHDVTPVPGYGPHGPFYRLYRIKPGYLAEIKWNGVWRTYRFVGRPTPHPQWPQSEVDKPIKNFGVETIYFRCCWPRYTRDDYLTARAVLVHTK*
Ga0070731_1000010383F003586AGGAGMAKRKRTKAEHEEFRQRYERAMENVRRTRELAERAQAKLDAERSSDSL*
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