NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068853_100222269

Scaffold Ga0068853_100222269


Overview

Basic Information
Taxon OID3300005539 Open in IMG/M
Scaffold IDGa0068853_100222269 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1725
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050293Metagenome145Y
F075221Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0068853_1002222691F050293GGAGMKPGWRKLCLPLLMACSLASMAQSRTPVADNKKVIEDARRAYYSLRTAGLDEFRATVKPNWELVLKDQLKADPVGAQAGLKLLNGIHFSMLLDNASKVTVTHRTDTEPSNEQQRKGFDDIYSGMDQAINGFFATWSLFMLNSPFPSPDGEYKLEDLGTQYRLSYKDGAADVITIMGKNLIITDIKVTSTEFNSSVRPQFVHTQKGFVLTGYDADYKPTSGPGVVKLALKIQHHPVNGLQLPDSLI
Ga0068853_1002222693F075221N/AMAPNTPNITYVACFTEDDGVYSCGHPHPTVREAMNCLVPDGGSFIRAYDAGIFRSLSNREFIDFLESLEQMPWSHRSKAQGNGLAVPAVETSE*
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