Scaffold Ga0070733_10003922

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0070733_10003922

Scaffold Ga0070733_10003922

Overview

Basic Information
Taxon OID	3300005541 Open in IMG/M
Scaffold ID	Ga0070733_10003922 Open in IMG/M
Source Dataset Name	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	10054
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (58.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location Name	USA: Pennsylvania, Centralia
Coordinates	Lat. (^o)	40.7999	Long. (^o)	-76.3402	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007287	Metagenome / Metatranscriptome	354	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070733_100039228	F007287	GGAGG	VPRKSSTRSRAIRFKTFPAIVLCAGIFWLPVPFAAASDWNYQETHSDARDFAAGGMVHVRLGVGDLHIRRGDSSKIHLSYTIKSRREQNVKNARLDFDVRGNDASIEFHAPTGGNTQFDVELEVPESTNLDVHDKVGDVTVENVEGDKDLELSVGDIRVASGHSGYRLVHASSGIGDVNGDGYGETSGWLGKTLKYHGEGKYELRAHVGVGDINLQGK*

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