Basic Information | |
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Taxon OID | 3300005542 Open in IMG/M |
Scaffold ID | Ga0070732_10039424 Open in IMG/M |
Source Dataset Name | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2710 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (80.00%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire. |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Pennsylvania, Centralia | |||||||
Coordinates | Lat. (o) | 40.7999 | Long. (o) | -76.3402 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F011259 | Metagenome / Metatranscriptome | 293 | Y |
F011803 | Metagenome / Metatranscriptome | 287 | Y |
F037883 | Metagenome / Metatranscriptome | 167 | Y |
F042033 | Metagenome / Metatranscriptome | 159 | Y |
F070583 | Metagenome / Metatranscriptome | 123 | Y |
F081702 | Metagenome / Metatranscriptome | 114 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0070732_100394244 | F011803 | AGGA | MNDEKRVLIRRGARELTPTESALVNGGFITFSLCTNSPSPDGDQHVGEVGC* |
Ga0070732_100394245 | F042033 | AGGAG | MNDQNRVLIRWGARSLSAEEMERVGGGLHTETACTVPTATCPNKDGDASIGECGPVCS* |
Ga0070732_100394246 | F081702 | AGGAGG | MNEQERVLIRRGARELNSEEVEQVGGGFNTLSITWGPNGRDGDGLLGES* |
Ga0070732_100394247 | F070583 | AGGAG | MNDESRVLIRRGARELDREETKKVSGGLNTQTACTWDPDFGGRDGDGPPEC* |
Ga0070732_100394248 | F011259 | AGGAG | MSRQDNRVLVRTGARELTIEEVDQVSAAMAAHTNVCTAIMATSTVTGPGDGDGCSDTDRDANFI* |
Ga0070732_100394249 | F037883 | AGGAG | MSNQNEPNRVLLRMGARVLTEQEVESVSAAGPPCQLTFTHLPKGGSDEDTFCP* |
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