NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070672_100991192

Scaffold Ga0070672_100991192


Overview

Basic Information
Taxon OID3300005543 Open in IMG/M
Scaffold IDGa0070672_100991192 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)744
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Selenomonadales → Selenomonadaceae → Selenomonas → Selenomonas infelix(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021840Metagenome / Metatranscriptome217Y

Sequences

Protein IDFamilyRBSSequence
Ga0070672_1009911921F021840GAGMINSRFTLTALLFAILAMGAASTAQADPISVCTGAGCSTTNVTGTIVAGNGTVTITLNNNLTNAQVVSVIQNVSGVYFQVSGYTLGAVALTGSNSTQSTNIDSNGNAVLAGAVNPTGWAAGHSGATITACVVCAFGVGPTAGPEQTLIGGTGSGLYANANGGIAGNNPHNPFLAGTLTLTLSVPGVTVNSTFS
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Institute for Fundamental Biomedical Research
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