NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070696_100128175

Scaffold Ga0070696_100128175


Overview

Basic Information
Taxon OID3300005546 Open in IMG/M
Scaffold IDGa0070696_100128175 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1843
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020982Metagenome / Metatranscriptome221N
F041239Metagenome / Metatranscriptome160N

Sequences

Protein IDFamilyRBSSequence
Ga0070696_1001281751F041239GAGMRESGLGLDVWWGEREYRACGASLECRGRYIVGKLFDLDTRMLQTAWLAAFGRRLLGPPEIQAHEITRSQWQLILSHMGARPDEIVDVQTRMGRI*
Ga0070696_1001281752F020982AGGMGDRTYKGVTYTLQLEAVEDGVFKAHARLLPSGPEVSFVDEASDHALRQAEIEIKQIIERREASAVVRERLPERKYRDVTYTIIVRTEATRVVTEVYFVRTNAVQRRPGPGTFFALFQGKTREKAIAQAERTFKAKIDEERGDARGRKG*
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