Scaffold Ga0070665_100001541

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0070665_100001541

Scaffold Ga0070665_100001541

Overview

Basic Information
Taxon OID	3300005548 Open in IMG/M
Scaffold ID	Ga0070665_100001541 Open in IMG/M
Source Dataset Name	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	26625
Total Scaffold Genes	31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	24 (77.42%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan, Kellogg Biological Station
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F055815	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070665_10000154116	F055815	AGGGGG	MSKGSVLTTIFIGGAVTAALSACDVQVHDQTPAQFPANHDVGMYEIKATTASDSMVSPGSVYLFGLSGKQRFELNPNRAGTEWHGMYSIRCQASFPLQLKAIWKVQGLSTRSILVPEQPREIKLVEPEPPKEAPPIDTSGKSPKGGWMGAVKYRFATQQNTQITAAHIEPVSQDPADVAAAKAISVTSPMPVDIPCGVSTEVELTSTAQKAQGNLVIDSNHPAYPHWTTKVVFAPK*

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