NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066701_10016703

Scaffold Ga0066701_10016703


Overview

Basic Information
Taxon OID3300005552 Open in IMG/M
Scaffold IDGa0066701_10016703 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3539
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005677Metagenome / Metatranscriptome393Y

Sequences

Protein IDFamilyRBSSequence
Ga0066701_100167033F005677N/AMNRCIAGFLISSLFAVGWLQASDKWVQVNNTHGWSISYPASWEAYVIQAPDSGRELSIQESDNVNFDGPKDCYEHKERCGLFQISLDSVKANRHFDFEKYVDGETQNSSAISKEAGQLDGMPAYFIKLPEDQRLVIVKYNSSIFRISYGPNDHKPTDKTLEEIFNRMLSTVKFKK*
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