NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066661_10072271

Scaffold Ga0066661_10072271


Overview

Basic Information
Taxon OID3300005554 Open in IMG/M
Scaffold IDGa0066661_10072271 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2016
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001925Metagenome616Y
F016512Metagenome246Y
F018335Metagenome235Y

Sequences

Protein IDFamilyRBSSequence
Ga0066661_100722711F001925N/APVMVTPYVPAVVEDNVQEAATVAFAVMLTGAGQVTVKPVAGLVTAVRLIVPAKLNVLVRETEIAEPVAPELKFTGLPTLIVKLPTWTVDAAE*
Ga0066661_100722712F001925AGTAGMVTPYVPAVVEDNVQEAATVAFAVMLTGAGQVTVKPVAGLVTAVRLTVPAKLNVLVSETEIEDPAAPELKFTGEPTLIVKLPTWTTTGPAV*
Ga0066661_100722714F018335N/AVRLVGQLAVRPVDGETTVVRATVPVKPLTGVTVIVELPVAPVLKSAGEEAEMVKSPVKVNMAEVE*
Ga0066661_100722715F016512GAGVPGEPAPVIVTEKVFAVEEVQDNDDVPVPFAVSDTGVTVNALQVKPAGRGVSERATVPTKLNVLVRVMVELIDEPAAPLGDVAPTVKSPT*
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