NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066692_10166966

Scaffold Ga0066692_10166966


Overview

Basic Information
Taxon OID3300005555 Open in IMG/M
Scaffold IDGa0066692_10166966 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1360
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022618Metagenome / Metatranscriptome213Y
F105663Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0066692_101669661F022618GAGMSVRSNWLVFLLLVCALLMSASTVAIAADKQVFKDEAGEVLYTIDENGIVSMFENGPGTDITLSVTRGTREQMQPQITEVTPNAVAAGTYTVLKLEGKNLVGAKVKLSAPAIEVGAYAGKPKRLDVPVTVPLSQPLGEFTIEVTTPVGSTTAKFTVTDVQIGGGGSPPVKDVITHPGMGYGADEGSGAISTRAPASCPLGMVGVASEGGGFCIEVDRSFSGDFRKAELSCAISGKRLCMLYEWKRACEQAAAG
Ga0066692_101669662F105663N/ADVSPYLTKPKSVDLPIRVGANVPPGEVVMELSTPIGKTRGTFKVTELKIGSSSPVHRDGIGKHQTISTTAPTSCPEGMVGVAAETGGFCIEIDRSYSGDVRKAERACAMAGKRLCQAIEWQNACEQAKSNGLGLKNMTGEWEWTGSYAKYDVQVQTGERDLSDELKSVLLGKNDCQTQYLYPSWRSGPYPGRCCK*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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