NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066692_10225703

Scaffold Ga0066692_10225703


Overview

Basic Information
Taxon OID3300005555 Open in IMG/M
Scaffold IDGa0066692_10225703 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1178
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008488Metagenome / Metatranscriptome332Y
F030007Metagenome / Metatranscriptome186Y

Sequences

Protein IDFamilyRBSSequence
Ga0066692_102257031F008488N/AIRGSRGVAALMALALLSVLSGTAGAADDTTVRFQGRVLWIAGETLIVGTEDSQSINVDLTHVSQDEYQRLERNDSVVVTGTIPTEGNRVVATSIEPLEP*
Ga0066692_102257032F030007GGAGGMTLADTTVMAVTTRALAFGLGLVLLTTTAWGQTGQSGEQEAQRWFRVSWAPPTDGVVSRIKGSVFNDSPYRVTDVRLRVEGLDPDRHLVGRTLAWAFGDIAPGGETSFVAEPMPGAVSYRITVVSYDLASLGQVR*
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