NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066707_10000891

Scaffold Ga0066707_10000891


Overview

Basic Information
Taxon OID3300005556 Open in IMG/M
Scaffold IDGa0066707_10000891 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10461
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005486Metagenome / Metatranscriptome399Y
F009803Metagenome / Metatranscriptome312Y

Sequences

Protein IDFamilyRBSSequence
Ga0066707_100008914F009803GAGGVRYGWLYLTGLTVVAPRAAAQVSARADVSAGGRYVWHGVSRAAGLVAQPSLAIGLRVHRISLESGAVLYYELDRASPGELSETGAGARGLGEDDIWGQASFVLGPTRLHAGVVRYAFHGDPAQGGVGSARNTTELFASVSTTSRYLNPTFEAWWDVERVHGAFLRASLDLPILGWPFPPYAFVFIQTEMGLNVGQGPSPTRPGELANFARRGITHVGLGLGTELRAGHLSGIGSATLALGARSQLNVDAATKFDGPGRSRDFVVWLWSGITIVLGGDRRNSP*
Ga0066707_100008916F005486AGGAGGMHRVSLLSLASFIAPLALAAQQPTTPHDSVRGAIRAVDTGARTLEVTTGVGLALRVVHLQVPAAVPITDQKGSQGAPISLAELKPGDVIRVSFGSRPTGFVAYTIERVGRMDAGVP*
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