NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066670_10379830

Scaffold Ga0066670_10379830


Overview

Basic Information
Taxon OID3300005560 Open in IMG/M
Scaffold IDGa0066670_10379830 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)863
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006513Metagenome371Y
F024996Metagenome203Y

Sequences

Protein IDFamilyRBSSequence
Ga0066670_103798302F006513GAGMWVSGKQLTGWACSACGWTFPLPSLLSDPEAKKAYDRLASAKFQRHDCATHRPVSLAPESFINRAKGLVMRGFKPKDAAEIAAREIMFENDHDPDIARKVQIEAQDFLRRVKEG*
Ga0066670_103798303F024996N/AMANRRRRQAKPGAELRAIRQQLGWSLREVHAASVALAKKSRQPAFVIPPSRLHDIERKNKIPSIHRLYALALIY

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