NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0058697_10001627

Scaffold Ga0058697_10001627


Overview

Basic Information
Taxon OID3300005562 Open in IMG/M
Scaffold IDGa0058697_10001627 Open in IMG/M
Source Dataset NameAgave microbial communities from Guanajuato, Mexico - As.Ma.e
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7932
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (93.75%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location
Location NameGuanajuato, Mexico
CoordinatesLat. (o)21.7658Long. (o)-100.163Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012851Metagenome276Y
F023050Metagenome211Y
F080632Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0058697_1000162712F012851AGGGGGLGKCSGITQAGTACKGIPIDGSQWCYVHHPDHVDERRRHGARGGKRGGRGRPIAELGALRVENADIRRRLLEGELLPNVAAVAVQSINTDIRAVGAAMKAREQEELIERLEALEEALEQRKGEHRYGT*
Ga0058697_1000162713F023050GGAGMGLRGWIKRLERRALGDLESFELLDGSTYYYDRLQTYKELFLHACDLQLGKGEWPEPPEVYCKMCEARDVAEVLERLKPENPEGAFVNLAELYDTDVLVNERRLVALYHAPVEDLSE*
Ga0058697_100016274F080632AGGMSSKEKSSAPAQPSTEEHDDTVEAHYASLERPHPCIEGVVYVGHLVVAEDGEEVEVVDAIACRRCAGAER*
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