NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0058697_10014166

Scaffold Ga0058697_10014166


Overview

Basic Information
Taxon OID3300005562 Open in IMG/M
Scaffold IDGa0058697_10014166 Open in IMG/M
Source Dataset NameAgave microbial communities from Guanajuato, Mexico - As.Ma.e
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2696
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location
Location NameGuanajuato, Mexico
CoordinatesLat. (o)21.7658Long. (o)-100.163Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001264Metagenome / Metatranscriptome735Y
F004101Metagenome / Metatranscriptome453Y
F072030Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0058697_100141661F072030N/AAPVYLEDVNDRGVVMLVTRHKDQSQFSRYFYPWSVVGWIRLAEEDEQAD*
Ga0058697_100141663F001264AGGAGMRAAQSVNEMVEEVLWRQAEAHAQRTGQPLAQARAAVLKTPAGRQLEELASGLHRHEEARYWQANLLIERVSEQSGHLLHNLAIQERGYGLRGRTSP*
Ga0058697_100141665F004101N/AVGYLISAAEGQGSANLTDSEWRALIYVASLHGFSAPHLRLEGEDETLEVGYSDALGLRSALGKALETRDIEQIRTPDGELYYDTIQRVRHVLLYEGVCLARPRA*
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