NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0058697_10031614

Scaffold Ga0058697_10031614


Overview

Basic Information
Taxon OID3300005562 Open in IMG/M
Scaffold IDGa0058697_10031614 Open in IMG/M
Source Dataset NameAgave microbial communities from Guanajuato, Mexico - As.Ma.e
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1932
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location
Location NameGuanajuato, Mexico
CoordinatesLat. (o)21.7658Long. (o)-100.163Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000756Metagenome / Metatranscriptome905Y
F003251Metagenome / Metatranscriptome497Y
F078299Metagenome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0058697_100316141F003251GGAGVQTKTYTTEKEAKKAAARAYRPAILRLPNGRYACFQAGDVLPQGARPVSRWGTDRWRAYN
Ga0058697_100316142F000756GGAGMARERPSASHSEGTIPETWIGQEVMIETTETLSSDLRAAAPVYLEDVNERGVVMLVTRHKDQSQFSRYFYPWSVVGWIRLAEEDEQAD*
Ga0058697_100316143F078299AGGAMSHLQMYQKPKYVQDDTVWVDQGAEQPVKGQVLLYMGRRTYEVALRSQGVRVVQEQAISLRTKGERR*
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