Scaffold Ga0068855_100002696

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0068855_100002696

Scaffold Ga0068855_100002696

Overview

Basic Information
Taxon OID	3300005563 Open in IMG/M
Scaffold ID	Ga0068855_100002696 Open in IMG/M
Source Dataset Name	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	21888
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (80.95%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan, Kellogg Biological Station
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F085762	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068855_10000269615	F085762	GAGG	VETVITISGADKAGSLAGLVVFLTRKGYVVKGQKVTDLPSGARLLKIRLGLAQVDKEKLASEIKALDPKLTVISVAFDGDGASGKTAQTPAQSAVALIKEMAGQFPDIVPLVRAYAGAFDLQARAAALLEAGKKIGGFHYRKEWSFGNPLRMPAALRRALVPALEKFAKVDTTDTRIVMPDSPFCATGVEINCCDFITGFMQGFLDAGPLSMHTQVEQAACKARGQSHCAYTVAYDVDR*

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