NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068855_100088528

Scaffold Ga0068855_100088528


Overview

Basic Information
Taxon OID3300005563 Open in IMG/M
Scaffold IDGa0068855_100088528 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3576
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F064075Metagenome129N

Sequences

Protein IDFamilyRBSSequence
Ga0068855_1000885286F064075N/ARQLHLWAIGAEPAWRTLGGTAKVHLADPPIGAIVSPMRPHTLVTALAVAVLSATTAGAQASTQSGQSAAQSSSPCHRCLNGFRFVPSSVVDEPFTNTSFENATGGGMALNLNVPVRKLDGDTIGTLNGNIGFFLLDFEYQKSVAKWLALRVGVNGIGRLGTSLEALVASGISAAMGGYIGATVPVWSKPNFLISAVADLKNNKQWDVDPYSFAKDVVDSGYNDTTKAVLLSSERVNRWSFGLRGAWAVKPWMGLTANIEPGGADGEVSGNKSLSTFGALAGFDLHKLWDVPISTTLAYRVRTGSGKSGNISGGYRSAQLGVYYNALREVLIGGDFFYSTIRVQGGSIPDLDAIQFRLVTHIDF*
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