NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070664_101258173

Scaffold Ga0070664_101258173


Overview

Basic Information
Taxon OID3300005564 Open in IMG/M
Scaffold IDGa0070664_101258173 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)698
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009131Metagenome / Metatranscriptome322Y
F032187Metagenome / Metatranscriptome180Y

Sequences

Protein IDFamilyRBSSequence
Ga0070664_1012581731F032187N/ALFTVCNSNIAVSSLRSEPAEASPGPHPKGDDEIRKMAEAIMDKVVDQLLN
Ga0070664_1012581732F009131N/AHLEINVKELRASQRRCYVKSIECVKKIKSSFANVGAFSSEENFSRGNPEGPMEWISHEAEAFEEILNSRGDICAFSGARGIATVLEKKGCEHVKSLAQSEATLSSEDIKDPSAEASMIGGKFFTDIWDNGGREMAQEIIQKSEKGIHDARKVAAAAEKSTEPEGQIGIN*
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