NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066693_10125126

Scaffold Ga0066693_10125126


Overview

Basic Information
Taxon OID3300005566 Open in IMG/M
Scaffold IDGa0066693_10125126 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)948
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043649Metagenome / Metatranscriptome156Y
F072588Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0066693_101251261F043649N/AMNCLPSGITVTVNHSVSPASTYNEFCAACAAWFYAVFGTATHVERNIYTEPGSCRLIDTFDNLQTALKNGSANGSFGDSVRNGQPSVSWYYHDFFDYRNVISGLGIEKTGGLQNMVNCPYPVNYYNRLFRYDAALGNYLVNVH
Ga0066693_101251262F072588N/ASGLDWNGPINLFRYYVSANTFSNLSTSQRTGALNYVGKEKAQEITSQFLNGTFTKTTPLRKIRVTNHAYYAMIGIPNDTWTTIYTGNPEIDEGIFSYVTPGSNVRIEGATGVLSILNGTYYNGIGLLNAGANLYLKRGFVDKGPHGSYNDLFYSFLLNLDTSTLQYLADPATG*
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