NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066705_10420848

Scaffold Ga0066705_10420848


Overview

Basic Information
Taxon OID3300005569 Open in IMG/M
Scaffold IDGa0066705_10420848 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)836
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012292Metagenome / Metatranscriptome282Y
F063996Metagenome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0066705_104208481F063996GGAGGVKKQYFFAYLFVRAARGLALLVILIGVGFCVLRYYQASIAADAVAYQRSPHLQQALDRLKAAFLATEQIIDSFNAGNQSKTPNFRAPRFPQVIDSDDDFARIGAELSRVDHERQQLKESIVSRFETLVKS
Ga0066705_104208482F012292N/APPPVSESVASLVDRARDFRAKVGYETALSECRSETETVDALSAVDQGTRNIAGNDASAANSGLTDFLKDNPEPTVDTQRPLWRYLTSMRLLCSRLEKEAEIHLERARAFASAGRTGDAIREYQEAYRTFPNPATAEKIRQLRRNGLGL*
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