NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066708_10696975

Scaffold Ga0066708_10696975


Overview

Basic Information
Taxon OID3300005576 Open in IMG/M
Scaffold IDGa0066708_10696975 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)643
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019174Metagenome / Metatranscriptome231Y
F101980Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0066708_106969751F019174N/AMVPLYAARIEDLGPGDFVRVECLACGHDLLIPPSSLLNGPRLPPYTPVLDLEQRLRCRECDLRG
Ga0066708_106969752F101980AGGAGGMAVLTPITVHVEKPVGVHFSECFAEMRMWLNAHKITPVDFRLSGGYSSIGLDIAFSNFEEADLFEREFSP

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